STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4279PFAM: amidohydrolase 2; KEGG: reu:Reut_B4612 amidohydrolase 2. (311 aa)    
Predicted Functional Partners:
Daci_4278
PFAM: conserved hypothetical protein; KEGG: reu:Reut_B4611 hypothetical protein.
       0.773
Daci_4277
PFAM: Dimethylmenaquinone methyltransferase; KEGG: vei:Veis_3988 dimethylmenaquinone methyltransferase.
 
   
 0.701
Daci_3813
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: azo:azo2537 protocatechuate 4,5-dioxygenase.
 
   
 0.662
Daci_4444
Oxidoreductase domain protein; PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: bra:BRADO2343 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase.
 
   
 0.661
Daci_4445
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: azo:azo2537 protocatechuate 4,5-dioxygenase.
 
   
 0.661
Daci_4449
PFAM: amidohydrolase 2; KEGG: pna:Pnap_2032 amidohydrolase 2.
 
   
 0.660
Daci_3814
KEGG: rpa:RPA4701 protocatechuate 4,5-dioxygenase, alpha chain; TIGRFAM: protocatechuate 4,5-dioxygenase, alpha subunit; PFAM: Extradiol ring-cleavage dioxygenase LigAB LigA subunit.
 
   
 0.658
Daci_0915
PFAM: Extradiol ring-cleavage dioxygenase LigAB LigA subunit; KEGG: pna:Pnap_2734 extradiol ring-cleavage dioxygenase LigAB, LigA subunit.
 
   
 0.649
Daci_4446
KEGG: azo:azo2538 protocatechuate 4,5-dioxygenase, alpha chain; TIGRFAM: protocatechuate 4,5-dioxygenase, alpha subunit; PFAM: Extradiol ring-cleavage dioxygenase LigAB LigA subunit.
 
   
 0.640
Daci_0914
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: pna:Pnap_2733 protocatechuate 4,5-dioxygenase.
 
   
 0.639
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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