STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4290PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pol:Bpro_0435 mandelate racemase/muconate lactonizing enzyme. (385 aa)    
Predicted Functional Partners:
Daci_0248
Glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ajs:Ajs_1990 glucarate dehydratase.
 
  
  0.973
Daci_0256
KEGG: ajs:Ajs_1998 galactarate dehydratase; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein.
 
 
 0.943
Daci_0251
TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; PFAM: dihydrodipicolinate synthetase; KEGG: pna:Pnap_1596 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
  
 0.936
Daci_0254
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ajs:Ajs_1996 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein.
 
  
 
0.931
Daci_4289
PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A0969 putative lipoprotein.
       0.631
Daci_4288
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pol:Bpro_0436 transcriptional regulator, LacI family.
 
     0.493
Daci_5597
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: vei:Veis_2571 SMP-30/gluconolaconase/LRE domain protein.
 
   
 0.433
Daci_0257
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ajs:Ajs_1999 gluconolactonase.
 
   
 0.418
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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