Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
Daci_4320Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rle:RL2808 putative transcriptional regulatory protein. (255 aa)    
Predicted Functional Partners:
Daci_4321
PFAM: regulatory protein AsnC/Lrp family; KEGG: ajs:Ajs_1942 putative transcriptional regulator, AsnC family.
  
  
 0.780
Daci_4319
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ppu:PP_4040 glyoxalase family protein.
 
     0.633
Daci_2438
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: aav:Aave_2212 transcriptional regulator, XRE family.
  
    0.595
Daci_4322
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mfa:Mfla_2395 periplasmic sensor signal transduction histidine kinase.
       0.508
Daci_0791
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
  
    0.497
Daci_1416
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rme:Rmet_4871 transcriptional regulator, AraC family.
 
 
 0.459
Daci_1880
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bam:Bamb_5992 transcriptional regulator, AraC family.
 
 
 0.412
Daci_5811
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN3005 hypothetical protein.
  
     0.412
Daci_2415
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: aav:Aave_2196 transcriptional regulator, AraC family.
 
 
 0.408
Daci_5827
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_B1536 putative transcriptional regulator, AraC family.
  
     0.406
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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