STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4331PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_3253 extracellular ligand-binding receptor. (373 aa)    
Predicted Functional Partners:
Daci_4332
PFAM: inner-membrane translocator; KEGG: ajs:Ajs_3254 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.992
Daci_4333
PFAM: inner-membrane translocator; KEGG: ajs:Ajs_3255 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.992
Daci_4334
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_3256 ABC transporter related.
 
  
 0.902
Daci_4335
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_3257 ABC transporter related.
 
  
 0.889
Daci_3027
PFAM: inner-membrane translocator; KEGG: maq:Maqu_3337 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.852
Daci_5353
PFAM: inner-membrane translocator; KEGG: ajs:Ajs_3363 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.846
Daci_3026
PFAM: inner-membrane translocator; KEGG: pol:Bpro_3335 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.823
Daci_5354
PFAM: inner-membrane translocator; KEGG: aav:Aave_1875 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.819
Daci_0261
PFAM: inner-membrane translocator; KEGG: reh:H16_B2038 ABC-type transporter, permease component: HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.806
Daci_0260
PFAM: inner-membrane translocator; KEGG: reh:H16_B2037 ABC-type transporter, permease component: HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.795
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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