STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4337PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aav:Aave_3151 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (258 aa)    
Predicted Functional Partners:
Daci_4336
TIGRFAM: pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: bbr:BB2870 pyridoxine kinase.
   
   0.790
Daci_3360
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_1695 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.590
Daci_5268
3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
 0.571
Daci_0266
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rso:RSc1763 gluconate 5-dehydrogenase.
  
     0.557
Daci_2285
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB0336 3-ketoacyl-(acyl-carrier-protein) reductase.
  
     0.551
Daci_4525
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aav:Aave_4512 short-chain dehydrogenase/reductase SDR.
  
     0.540
Daci_5677
TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: pfl:PFL_3434 3-oxoacyl-(acyl-carrier-protein) synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.530
Daci_0612
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mfa:Mfla_2644 short-chain dehydrogenase/reductase SDR.
  
     0.521
Daci_5271
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: ajs:Ajs_3279 malonyl CoA-acyl carrier protein transacylase.
 
 
 0.511
Daci_1762
KEGG: rfr:Rfer_1849 (acyl-carrier protein) S-malonyltransferase.
 
 
 0.497
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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