Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Daci_4346KEGG: nar:Saro_3185 transglycosylase-associated protein. (92 aa)    
Predicted Functional Partners:
Daci_4345
KEGG: mpt:Mpe_A2420 hypothetical protein.
       0.573
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
 
  
 0.570
Daci_2707
KEGG: swi:Swit_3710 outer membrane efflux protein.
  
     0.554
Daci_4835
KEGG: aav:Aave_3091 putative uncharacterized conserved protein.
   
    0.528
Daci_2262
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: aav:Aave_2035 response regulator receiver protein.
  
    0.471
Daci_5318
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: aav:Aave_1947 response regulator receiver protein.
  
    0.455
Daci_4998
KEGG: ajs:Ajs_1193 hypothetical protein.
 
    0.438
Daci_4344
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: aav:Aave_1901 two component, sigma54 specific, transcriptional regulator, fis family.
       0.434
Daci_1927
PFAM: protein of unknown function DUF1508; KEGG: pfo:Pfl_1378 duplicated hypothetical protein.
  
  
 0.415
Daci_1386
PFAM: protein of unknown function DUF88; KEGG: aav:Aave_4318 protein of unknown function DUF88.
  
     0.408
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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