STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4351KEGG: nwi:Nwi_0342 hypothetical protein. (66 aa)    
Predicted Functional Partners:
Daci_4350
Hypothetical protein.
       0.773
Daci_4349
KEGG: ajs:Ajs_2974 hypothetical protein.
       0.618
Daci_4352
KEGG: bbt:BBta_5808 putative sensor histidine kinase with multiple PAS and a response regulator receiver domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein.
       0.618
Daci_5158
TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: mca:MCA2652 hypothetical protein.
  
 
 0.594
Daci_5834
KEGG: vei:Veis_2291 putative transcriptional regulators, CopG/Arc/MetJ family.
  
 
 0.594
Daci_5941
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.559
Daci_0439
PFAM: CopG domain protein DNA-binding domain protein; KEGG: pau:PA14_30950 hypothetical protein.
  
 
 0.557
Daci_2700
PFAM: CopG domain protein DNA-binding domain protein; KEGG: pau:PA14_30950 hypothetical protein.
  
 
 0.557
Daci_4353
Amidase, hydantoinase/carbamoylase family; KEGG: bbr:BB2432 N-carbamoyl-L-amino acid amidohydrolase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20.
       0.468
Daci_4839
TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin.
   
   0.462
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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