Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4375KEGG: ppf:Pput_2741 GCN5-related N-acetyltransferase. (167 aa)    
Predicted Functional Partners:
Daci_3778
KEGG: aav:Aave_0646 UvrD/REP helicase.
  
     0.730
Daci_3687
PFAM: Propeptide PepSY amd peptidase M4; KEGG: prw:PsycPRwf_1922 propeptide, PepSY amd peptidase M4.
  
     0.665
Daci_5302
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ajs:Ajs_3303 endonuclease/exonuclease/phosphatase.
  
     0.598
Daci_5214
Hypothetical protein; KEGG: bbt:BBta_6747 putative resolvase (site-specific recombinase).
  
    0.568
Daci_4376
PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_6588 GCN5-related N-acetyltransferase.
  
 
 0.538
Daci_5522
KEGG: ajs:Ajs_0761 hypothetical protein.
  
     0.530
Daci_3947
PFAM: integrase family protein; KEGG: pna:Pnap_4572 phage integrase; Belongs to the 'phage' integrase family.
  
     0.502
Daci_4600
PFAM: cobalt transport protein; KEGG: ajs:Ajs_2320 cobalt transport protein.
  
    0.483
Daci_5288
PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_3297 hypothetical protein.
  
    0.470
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.457
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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