Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4386PFAM: monooxygenase FAD-binding; KEGG: bra:BRADO0592 putative flavoprotein monooxygenase. (441 aa)    
Predicted Functional Partners:
Daci_3698
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: pol:Bpro_2199 monooxygenase, FAD-binding.
  
  
 
0.910
Daci_4387
PFAM: extracellular solute-binding protein family 3; KEGG: aav:Aave_3756 extracellular solute-binding protein, family 3.
       0.578
Daci_4388
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3755 polar amino acid ABC transporter, inner membrane subunit.
       0.578
Daci_4389
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3754 polar amino acid ABC transporter, inner membrane subunit.
       0.578
Daci_2715
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component domain; KEGG: rme:Rmet_3017 ferric reductase-like transmembrane component-like.
   
    0.577
Daci_4385
PFAM: regulatory protein TetR; KEGG: pna:Pnap_1293 transcriptional regulator, TetR family.
       0.559
Daci_0687
PFAM: ferredoxin; cytochrome P450; Oxidoreductase FAD-binding domain protein; KEGG: reu:Reut_B5278 ferredoxin:cytochrome P450:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region.
 
 
 0.558
Daci_3064
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aav:Aave_1367 TonB-dependent siderophore receptor.
   
    0.550
Daci_3270
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN3225 TonB-dependent siderophore receptor FpvA.
   
    0.550
Daci_1854
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: aav:Aave_3926 (2Fe-2S)-binding domain protein.
  
  
 0.526
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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