STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4393PFAM: metallophosphoesterase; KEGG: ilo:IL0118 calcineurin-like phosphoesterase. (704 aa)    
Predicted Functional Partners:
Daci_4508
KEGG: hhe:HH1512 hypothetical protein.
 
   
 0.731
Daci_2598
KEGG: oan:Oant_1495 virulence-associated protein.
  
     0.602
Daci_2632
KEGG: oan:Oant_1495 virulence-associated protein.
  
     0.602
Daci_0496
KEGG: rme:Rmet_1466 hypothetical protein.
  
     0.547
Daci_4392
PFAM: glycosyl transferase family 9; KEGG: bam:Bamb_5648 glycosyl transferase, family 9.
       0.501
Daci_3831
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; KEGG: aav:Aave_3996 multi-sensor hybrid histidine kinase.
  
  
 0.458
Daci_6017
KEGG: maq:Maqu_3675 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; MHYT domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.456
Daci_1332
Hypothetical protein; KEGG: aav:Aave_1629 carbohydrate-binding family V/XII.
  
     0.445
Daci_5834
KEGG: vei:Veis_2291 putative transcriptional regulators, CopG/Arc/MetJ family.
  
     0.438
Daci_4365
PFAM: protein kinase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; tyrosine protein kinase; serine/threonine protein kinase; KEGG: aav:Aave_3066 serine/threonine protein kinase.
     
 0.435
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.