STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4401PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_4589 major facilitator superfamily MFS_1. (461 aa)    
Predicted Functional Partners:
Daci_4402
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pol:Bpro_2663 lysine exporter protein (LysE/YggA).
       0.773
Daci_5620
KEGG: reh:H16_B1869 cytochrome c, mono-and diheme variants.
  
     0.674
Daci_3497
KEGG: aav:Aave_3244 hypothetical protein.
  
   
 0.639
Daci_4400
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_4590 transcriptional regulator, LysR family.
 
     0.639
Daci_1984
PFAM: Na+/solute symporter; KEGG: reh:H16_B0867 APC transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.555
Daci_0961
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_3684 glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.478
Daci_3292
TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: aav:Aave_3069 thiamine biosynthesis protein ThiS.
  
     0.475
Daci_2014
KEGG: vei:Veis_4644 porin, gram-negative type.
  
     0.438
Daci_0949
PFAM: Cupin 2 conserved barrel domain protein; KEGG: pol:Bpro_3691 cupin 2, conserved barrel.
  
     0.422
Daci_4436
PFAM: porin Gram-negative type; KEGG: bxe:Bxe_C0935 outer membrane porin, OmpC family.
  
     0.415
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.