STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4420PFAM: extracellular solute-binding protein family 3; KEGG: ajs:Ajs_0608 extracellular solute-binding protein, family 3. (297 aa)    
Predicted Functional Partners:
Daci_1366
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0611 polar amino acid ABC transporter, inner membrane subunit.
 
 
 0.838
Daci_1365
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0610 polar amino acid ABC transporter, inner membrane subunit.
 
 
 0.837
Daci_1367
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0612 ABC transporter related.
 
 
 0.835
Daci_4388
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3755 polar amino acid ABC transporter, inner membrane subunit.
 
 
 0.801
Daci_4389
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3754 polar amino acid ABC transporter, inner membrane subunit.
 
 
 0.791
Daci_5771
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_2629 amino acid ABC transporter, permease protein.
 
 
 0.779
Daci_0358
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0244 ABC transporter related.
 
 
 0.766
Daci_5770
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_2628 amino acid ABC transporter, permease protein.
 
 
 0.763
Daci_0228
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_0209 polar amino acid ABC transporter, inner membrane subunit.
 
 
 0.761
Daci_0229
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RSc2104 probable amino-acid transmembrane ABC transporter protein.
 
 
 0.759
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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