STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4435PFAM: oxidoreductase domain protein; dihydrodipicolinate reductase; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: pol:Bpro_4498 oxidoreductase-like. (352 aa)    
Predicted Functional Partners:
Daci_0984
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: vei:Veis_0068 myo-inositol catabolism IolB domain protein.
 
  
 0.778
Daci_2931
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rso:RSc1239 putative acetolactate synthase protein; Belongs to the TPP enzyme family.
 
  
 0.774
Daci_4442
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pna:Pnap_1656 xylose isomerase domain protein TIM barrel.
 
  
 0.765
Daci_4436
PFAM: porin Gram-negative type; KEGG: bxe:Bxe_C0935 outer membrane porin, OmpC family.
       0.762
aroQ-2
3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
 
     0.673
Daci_0985
PFAM: PfkB domain protein; KEGG: rso:RSc1240 probable transferase kinase protein.
 
  
 0.645
Daci_2932
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bvi:Bcep1808_1385 xylose isomerase domain protein TIM barrel.
 
  
 0.625
Daci_4437
PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: reu:Reut_B5029 shikimate 5-dehydrogenase.
 
   
 0.613
Daci_0606
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mfa:Mfla_2640 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.610
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: aav:Aave_1204 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.552
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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