Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4436PFAM: porin Gram-negative type; KEGG: bxe:Bxe_C0935 outer membrane porin, OmpC family. (383 aa)    
Predicted Functional Partners:
Daci_4435
PFAM: oxidoreductase domain protein; dihydrodipicolinate reductase; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: pol:Bpro_4498 oxidoreductase-like.
       0.762
Daci_3662
PFAM: Ig family protein; KEGG: rfr:Rfer_1577 protease-like.
  
     0.647
aroQ-2
3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.595
Daci_3228
KEGG: reu:Reut_B4055 hypothetical protein.
  
     0.589
Daci_1499
KEGG: aav:Aave_0862 histone protein.
 
     0.562
Daci_1331
Hypothetical protein; KEGG: aav:Aave_1628 prophage tail length tape measure.
  
     0.559
Daci_1311
KEGG: aav:Aave_4148 hypothetical protein.
  
     0.551
Daci_3218
KEGG: sat:SYN_01843 hypothetical cytosolic protein.
  
     0.545
Daci_1304
KEGG: aav:Aave_4155 general secretion pathway protein J.
  
     0.541
Daci_1933
KEGG: bbr:BB3510 phage-related hypothetical protein.
  
     0.541
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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