STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4449PFAM: amidohydrolase 2; KEGG: pna:Pnap_2032 amidohydrolase 2. (342 aa)    
Predicted Functional Partners:
Daci_4448
TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase; KEGG: pol:Bpro_4321 dimethylmenaquinone methyltransferase.
 
  
 0.991
Daci_4451
PFAM: protein of unknown function DUF453; KEGG: pna:Pnap_2033 protein of unknown function DUF453.
 
  
 0.977
Daci_4447
PFAM: amidohydrolase 2; KEGG: azo:azo2539 probable 2-pyrone-4,6-dicarboxylate hydrolase.
 
   
 0.930
Daci_4277
PFAM: Dimethylmenaquinone methyltransferase; KEGG: vei:Veis_3988 dimethylmenaquinone methyltransferase.
 
  
 0.928
Daci_4446
KEGG: azo:azo2538 protocatechuate 4,5-dioxygenase, alpha chain; TIGRFAM: protocatechuate 4,5-dioxygenase, alpha subunit; PFAM: Extradiol ring-cleavage dioxygenase LigAB LigA subunit.
 
   
 0.908
Daci_4445
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: azo:azo2537 protocatechuate 4,5-dioxygenase.
 
   
 0.907
Daci_4444
Oxidoreductase domain protein; PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: bra:BRADO2343 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase.
 
  
 0.880
Daci_3814
KEGG: rpa:RPA4701 protocatechuate 4,5-dioxygenase, alpha chain; TIGRFAM: protocatechuate 4,5-dioxygenase, alpha subunit; PFAM: Extradiol ring-cleavage dioxygenase LigAB LigA subunit.
 
   
 0.810
Daci_3813
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: azo:azo2537 protocatechuate 4,5-dioxygenase.
 
   
 0.807
Daci_0914
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: pna:Pnap_2733 protocatechuate 4,5-dioxygenase.
 
   
 0.805
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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