STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4452KEGG: ajs:Ajs_1927 hypothetical protein. (205 aa)    
Predicted Functional Partners:
Daci_4453
PFAM: conserved hypothetical protein; KEGG: reu:Reut_B3798 hypothetical protein.
       0.548
Daci_4454
PFAM: amidohydrolase 2; KEGG: rso:RS05190 probable hydrolase transmembrane protein.
       0.548
Daci_4451
PFAM: protein of unknown function DUF453; KEGG: pna:Pnap_2033 protein of unknown function DUF453.
       0.486
Daci_2904
KEGG: aav:Aave_1802 hypothetical protein.
  
     0.406
Daci_4455
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_B1617 transcriptional regulator, LysR family.
       0.406
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.