Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4454PFAM: amidohydrolase 2; KEGG: rso:RS05190 probable hydrolase transmembrane protein. (304 aa)    
Predicted Functional Partners:
Daci_4453
PFAM: conserved hypothetical protein; KEGG: reu:Reut_B3798 hypothetical protein.
       0.773
Daci_4451
PFAM: protein of unknown function DUF453; KEGG: pna:Pnap_2033 protein of unknown function DUF453.
 
   
 0.667
Daci_4445
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: azo:azo2537 protocatechuate 4,5-dioxygenase.
 
   
 0.660
Daci_4449
PFAM: amidohydrolase 2; KEGG: pna:Pnap_2032 amidohydrolase 2.
 
   
 0.643
Daci_4446
KEGG: azo:azo2538 protocatechuate 4,5-dioxygenase, alpha chain; TIGRFAM: protocatechuate 4,5-dioxygenase, alpha subunit; PFAM: Extradiol ring-cleavage dioxygenase LigAB LigA subunit.
 
   
 0.638
Daci_4444
Oxidoreductase domain protein; PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: bra:BRADO2343 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase.
 
   
 0.628
Daci_4455
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_B1617 transcriptional regulator, LysR family.
 
     0.606
Daci_3813
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: azo:azo2537 protocatechuate 4,5-dioxygenase.
 
   
 0.593
Daci_4448
TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase; KEGG: pol:Bpro_4321 dimethylmenaquinone methyltransferase.
 
   
 0.591
Daci_3814
KEGG: rpa:RPA4701 protocatechuate 4,5-dioxygenase, alpha chain; TIGRFAM: protocatechuate 4,5-dioxygenase, alpha subunit; PFAM: Extradiol ring-cleavage dioxygenase LigAB LigA subunit.
 
   
 0.589
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.