Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4459KEGG: ccr:CC_1520 hypothetical protein. (454 aa)    
Predicted Functional Partners:
Daci_4461
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccr:CC_1518 ABC transporter, ATP-binding protein.
 
  
 0.947
Daci_4460
KEGG: xom:XOO_0574 hypothetical protein.
 
   
0.870
Daci_4462
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aav:Aave_4000 TonB-dependent siderophore receptor.
 
     0.861
Daci_4463
Hypothetical protein.
       0.620
Daci_0759
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: ajs:Ajs_2361 ABC transporter related.
  
  
 0.585
Daci_0140
KEGG: xcb:XC_1336 hypothetical protein.
  
     0.579
Daci_1824
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chu:CHU_1770 ABC transporter, ATP-binding protein.
  
  
 0.566
Daci_5057
PFAM: PepSY-associated TM helix domain protein; KEGG: mpt:Mpe_A3730 hypothetical protein.
 
     0.506
Daci_0139
KEGG: ccr:CC_2193 hypothetical protein.
  
     0.497
Daci_5055
KEGG: xcb:XC_1336 hypothetical protein.
  
     0.492
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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