STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4461PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccr:CC_1518 ABC transporter, ATP-binding protein. (273 aa)    
Predicted Functional Partners:
Daci_4460
KEGG: xom:XOO_0574 hypothetical protein.
 
 
 0.987
Daci_4459
KEGG: ccr:CC_1520 hypothetical protein.
 
  
 0.948
Daci_4462
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aav:Aave_4000 TonB-dependent siderophore receptor.
 
     0.809
Daci_4463
Hypothetical protein.
       0.608
Daci_2298
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: reu:Reut_C6418 AAA ATPase, central region.
  
 
 0.542
Daci_1595
ABC transporter related; PFAM: Dual specificity protein phosphatase; ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_0369 ABC transporter related.
  
   
 0.540
cysS
KEGG: ajs:Ajs_1623 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   
 0.532
Daci_1433
2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: rso:RSp0521 probable chaperone transmembrane protein.
 
 
 0.528
eno
Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
 
 
 
 0.527
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.525
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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