STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4464Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bbr:BB0627 hypothetical protein. (204 aa)    
Predicted Functional Partners:
Daci_1071
PFAM: regulatory protein TetR; KEGG: rfr:Rfer_3897 transcriptional regulator, TetR family.
  
     0.519
Daci_4463
Hypothetical protein.
       0.490
Daci_4461
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccr:CC_1518 ABC transporter, ATP-binding protein.
     
 0.416
Daci_4460
KEGG: xom:XOO_0574 hypothetical protein.
       0.413
Daci_4459
KEGG: ccr:CC_1520 hypothetical protein.
       0.400
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.