STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4465PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: aav:Aave_2580 histone family protein nucleoid-structuring protein H-NS. (92 aa)    
Predicted Functional Partners:
Daci_6032
KEGG: ajs:Ajs_4108 hypothetical protein.
  
     0.739
Daci_4869
KEGG: ajs:Ajs_1767 putative transmembrane protein.
  
     0.658
Daci_5347
KEGG: aav:Aave_1882 hypothetical protein.
  
     0.626
Daci_4894
PFAM: porin Gram-negative type; KEGG: bur:Bcep18194_B0482 outer membrane protein (porin).
  
    0.578
Daci_2423
KEGG: aav:Aave_2200 protein of unknown function DUF339.
  
     0.565
Daci_2920
PFAM: porin Gram-negative type; KEGG: aav:Aave_1125 porin, gram-negative type.
  
    0.510
Daci_5328
KEGG: ajs:Ajs_3321 hypothetical protein.
  
     0.499
Daci_1270
PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_0522 GCN5-related N-acetyltransferase.
  
     0.481
Daci_4910
KEGG: aav:Aave_2634 putative inner membrane transmembrane protein.
  
     0.474
Daci_4870
KEGG: ajs:Ajs_1766 putative transmembrane protein.
  
     0.466
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.