Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4488PFAM: Extracellular ligand-binding receptor; KEGG: bbr:BB4422 putative ABC transporter substrate binding protein. (391 aa)    
Predicted Functional Partners:
Daci_4486
PFAM: inner-membrane translocator; KEGG: bbr:BB4420 probable branched-chain amino acid transport system, permease component.
 
    0.919
Daci_4487
PFAM: inner-membrane translocator; KEGG: bbr:BB4421 probable branched-chain amino acid transport system, permease component.
 
  
 0.919
Daci_4484
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpe:BP0305 high-affinity branched-chain amino acid transporter, ATP-binding protein.
 
  
 0.902
Daci_4485
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB4419 putative branched-chain amino acid transporter, ATP-binding protein.
 
    0.899
Daci_0078
PFAM: inner-membrane translocator; KEGG: reh:H16_A1415 ABC-type transporter, permease component: HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.793
Daci_0079
PFAM: inner-membrane translocator; KEGG: rfr:Rfer_0212 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.772
Daci_4490
PFAM: regulatory protein MarR; KEGG: bbr:BB4424 MarR-family transcriptional regulator.
 
     0.764
Daci_0574
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_3953 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.707
Daci_4489
KEGG: bpe:BP0300 putative esterase.
 
    0.684
Daci_0080
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_2953 ABC transporter related.
 
    0.661
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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