STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4490PFAM: regulatory protein MarR; KEGG: bbr:BB4424 MarR-family transcriptional regulator. (162 aa)    
Predicted Functional Partners:
Daci_4489
KEGG: bpe:BP0300 putative esterase.
 
     0.816
Daci_4472
PFAM: NADH:flavin oxidoreductase/NADH oxidase; monooxygenase FAD-binding; KEGG: bbr:BB4417 hypothetical protein.
 
  
 0.815
Daci_4466
PFAM: Endoribonuclease L-PSP; KEGG: bbr:BB4411 hypothetical protein.
 
     0.776
Daci_4467
PFAM: thioesterase superfamily protein; KEGG: bbr:BB4412 probable 4-hydroxybenzoyl CoA thioesterase.
 
     0.769
Daci_4488
PFAM: Extracellular ligand-binding receptor; KEGG: bbr:BB4422 putative ABC transporter substrate binding protein.
 
     0.766
Daci_4468
PFAM: AMP-dependent synthetase and ligase; KEGG: bbr:BB4413 probable acid-coenzyme A ligase.
 
     0.765
Daci_4470
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB4415 putative enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
     0.763
Daci_4469
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bbr:BB4414 putative acyl-CoA dehydrogenase.
 
     0.728
Daci_4487
PFAM: inner-membrane translocator; KEGG: bbr:BB4421 probable branched-chain amino acid transport system, permease component.
 
     0.585
Daci_4471
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbr:BB4416 probable short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.583
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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