STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4514YD repeat protein; KEGG: mba:Mbar_A3399 hypothetical protein; TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; SMART: Hedgehog/intein hint domain protein. (3689 aa)    
Predicted Functional Partners:
Daci_4515
APHP domain protein; PFAM: coagulation factor 5/8 type domain protein; Fibronectin type III domain protein; APHP domain protein; KEGG: gur:Gura_0068 fibronectin, type III domain protein.
 
     0.875
Daci_3724
Rhs family protein-like protein; KEGG: pau:PA14_20520 hypothetical protein.
 
   
 0.732
Daci_3727
Hypothetical protein; KEGG: sdn:Sden_2437 YD repeat.
 
   
 0.719
Daci_3726
Hypothetical protein; KEGG: sdn:Sden_2437 YD repeat.
 
   
 0.717
Daci_4513
KEGG: tfu:Tfu_1003 hypothetical protein.
       0.682
Daci_3321
KEGG: sen:SACE_4995 hypothetical protein.
 
     0.639
Daci_4753
TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: bbt:BBta_6813 arthrofactin synthetase/syringopeptin synthetase C-related non-ribosomal peptide synthetase.
 
  
 0.578
Daci_0206
Hypothetical protein; KEGG: stm:STM0283 putative inner membrane protein.
  
 
 0.432
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
    0.420
Daci_2162
Transcriptional regulator, AraC family; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: rso:RSc2570 probable ADA regulatory of adaptative response contains: methylated-DNA--protein-cysteine methyltransferaseO-6-methylguanine-DNA transcription regulator.
 
    0.419
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.