STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4528PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_4515 ABC transporter-related protein. (268 aa)    
Predicted Functional Partners:
Daci_4527
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_4514 binding-protein-dependent transport systems inner membrane component.
  
 0.930
Daci_4526
PFAM: NMT1/THI5 like domain protein; KEGG: aav:Aave_4513 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein.
 
  
 0.801
Daci_4529
PFAM: acyl-CoA reductase; KEGG: aav:Aave_4516 putative acyl-CoA reductase.
       0.779
Daci_4530
KEGG: aav:Aave_4517 putative acyl protein synthase/acyl-CoA reductase-like protein.
       0.778
Daci_5822
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pap:PSPA7_2932 probable permease of ABC transporter.
  
 0.758
Daci_2376
TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_2146 nitrate ABC transporter, inner membrane subunit.
 
  
 0.743
Daci_0146
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1046 binding-protein-dependent transport systems inner membrane component.
 
  
 0.736
Daci_1140
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_1091 binding-protein-dependent transport systems inner membrane component.
  
 0.722
Daci_5618
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_B1867 ABC-type sulfonate transporter, permease component.
 
  
 0.653
Daci_4525
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aav:Aave_4512 short-chain dehydrogenase/reductase SDR.
       0.651
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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