STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4536PFAM: regulatory protein MarR; KEGG: pna:Pnap_0603 transcriptional regulator, MarR family. (166 aa)    
Predicted Functional Partners:
Daci_3696
PFAM: regulatory protein MarR; KEGG: pol:Bpro_2197 transcriptional regulator, MarR family.
  
     0.633
Daci_4358
KEGG: pna:Pnap_1901 4-hydroxybenzoate 3-monooxygenase; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase FAD-binding.
  
  
 0.588
Daci_4535
KEGG: tbd:Tbd_1197 hypothetical protein.
       0.551
Daci_5402
PFAM: regulatory protein MarR; transcriptional regulator TrmB; KEGG: aav:Aave_4468 transcriptional regulator, TrmB.
  
     0.485
Daci_4537
PFAM: amidohydrolase 2; KEGG: pna:Pnap_0606 amidohydrolase 2.
 
     0.475
Daci_5714
PFAM: regulatory protein MarR; KEGG: xau:Xaut_1307 transcriptional regulator, MarR family.
  
     0.466
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.