Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Daci_4539PFAM: porin Gram-negative type; KEGG: pol:Bpro_3117 porin, gram-negative type. (382 aa)    
Predicted Functional Partners:
Daci_2987
PFAM: Thioredoxin domain; KEGG: aav:Aave_3386 hypothetical protein.
  
     0.726
Daci_0832
KEGG: ajs:Ajs_4052 putative lipoprotein transmembrane.
  
   
 0.690
Daci_1840
KEGG: ajs:Ajs_3490 putative lipoprotein.
  
   
 0.688
Daci_4540
PFAM: conserved hypothetical protein; KEGG: pna:Pnap_0604 uncharacterized protein UPF0065.
       0.615
Daci_2556
KEGG: pol:Bpro_4732 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane.
  
     0.609
Daci_4870
KEGG: ajs:Ajs_1766 putative transmembrane protein.
  
     0.604
Daci_5328
KEGG: ajs:Ajs_3321 hypothetical protein.
  
     0.586
Daci_2920
PFAM: porin Gram-negative type; KEGG: aav:Aave_1125 porin, gram-negative type.
  
  
 
0.542
Daci_2933
PFAM: porin Gram-negative type; KEGG: rso:RSc1236 probable outer membrane porin lipoprotein transmembrane.
  
  
 
0.540
Daci_6032
KEGG: ajs:Ajs_4108 hypothetical protein.
  
     0.538
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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