Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4554Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pol:Bpro_3872 transcriptional regulator, GntR family. (325 aa)    
Predicted Functional Partners:
Daci_4553
SMART: extracellular solute-binding protein family 3; KEGG: pol:Bpro_3873 extracellular solute-binding protein, family 3.
 
     0.860
Daci_4552
KEGG: pol:Bpro_3874 putative hemagglutinin-related protein.
 
   
 0.842
Daci_4555
PFAM: aconitate hydratase domain protein; KEGG: pol:Bpro_3871 aconitate hydratase-like.
  
    0.728
Daci_4556
PFAM: conserved hypothetical protein; KEGG: pol:Bpro_3870 uncharacterized protein UPF0065.
 
     0.639
Daci_5143
KEGG: psa:PST_3463 hypothetical protein.
  
     0.554
Daci_0060
Glutamate carboxypeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bja:bll3749 glutamate carboxypepticase.
  
     0.516
Daci_0532
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: aav:Aave_4505 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
     0.475
Daci_5892
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rme:Rmet_1118 TonB-dependent siderophore receptor.
  
     0.410
Daci_2927
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bur:Bcep18194_A4571 xylose isomerase-like TIM barrel.
 
     0.406
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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