STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4558KEGG: bur:Bcep18194_A4864 metal-dependent phosphohydrolase. (381 aa)    
Predicted Functional Partners:
Daci_4559
KEGG: pfl:PFL_3007 homolog of eukaryotic DNA ligase III.
 
     0.927
Daci_0160
PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: hch:HCH_03958 retron-type reverse transcriptase.
  
     0.752
Daci_0161
PFAM: zinc finger SWIM domain protein; KEGG: hch:HCH_03960 protein containing SWIM zinc finger domain.
 
     0.747
kptA
Phosphate acetyltransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
 
     0.725
Daci_0162
Hypothetical protein; KEGG: hch:HCH_03961 probable DNA binding protein containing WGR domain.
  
     0.674
Daci_3819
SMART: AAA ATPase; KEGG: pmy:Pmen_3386 hypothetical protein.
 
     0.572
Daci_3820
PFAM: band 7 protein; KEGG: pmy:Pmen_3387 hypothetical protein.
 
     0.548
Daci_1318
PFAM: glycosyl transferase family 2; methyltransferase small; Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: aav:Aave_4142 glycosyl transferase, family 2.
   
   0.504
Daci_3821
KEGG: sde:Sde_3478 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6.
  
     0.496
Daci_5761
PFAM: conserved hypothetical protein; KEGG: pfl:PFL_5821 hypothetical protein.
  
     0.486
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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