STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4559KEGG: pfl:PFL_3007 homolog of eukaryotic DNA ligase III. (284 aa)    
Predicted Functional Partners:
Daci_4558
KEGG: bur:Bcep18194_A4864 metal-dependent phosphohydrolase.
 
     0.927
kptA
Phosphate acetyltransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
  
     0.700
Daci_0161
PFAM: zinc finger SWIM domain protein; KEGG: hch:HCH_03960 protein containing SWIM zinc finger domain.
  
     0.580
Daci_0160
PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: hch:HCH_03958 retron-type reverse transcriptase.
  
     0.560
Daci_2460
TIGRFAM: release factor H-coupled RctB family protein; PFAM: protein of unknown function UPF0027; KEGG: pfl:PFL_2087 RtcB protein.
  
   
 0.556
rtcB
PFAM: protein of unknown function UPF0027; KEGG: bur:Bcep18194_B0923 hypothetical protein; Belongs to the RtcB family.
  
   
 0.527
Daci_3819
SMART: AAA ATPase; KEGG: pmy:Pmen_3386 hypothetical protein.
  
     0.505
Daci_5761
PFAM: conserved hypothetical protein; KEGG: pfl:PFL_5821 hypothetical protein.
  
     0.496
Daci_4844
PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: pna:Pnap_3742 VWA containing CoxE family protein.
  
     0.475
Daci_0162
Hypothetical protein; KEGG: hch:HCH_03961 probable DNA binding protein containing WGR domain.
  
     0.469
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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