STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4561PFAM: 4-oxalocrotonate tautomerase; KEGG: pol:Bpro_0509 4-oxalocrotonate tautomerase. (127 aa)    
Predicted Functional Partners:
Daci_4560
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_0510 transcriptional regulator, LysR family.
 
     0.791
Daci_1881
PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: bur:Bcep18194_C6613 metal-dependent phosphohydrolase.
  
     0.564
hemL
TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: ajs:Ajs_3581 glutamate-1-semialdehyde-2,1-aminomutase.
      
 0.460
Daci_3135
KEGG: mms:mma_3541 thiosulfate reductase cytochrome b subunit (membrane anchoring protein).
  
     0.452
Daci_5383
TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: aav:Aave_3449 riboflavin biosynthesis protein RibF; Belongs to the ribF family.
   
 
 0.452
Daci_2772
PFAM: UspA domain protein; KEGG: vei:Veis_1173 UspA domain protein.
  
  
 0.415
Daci_4356
PFAM: UspA domain protein; KEGG: aav:Aave_3154 UspA domain protein.
  
  
 0.415
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.