Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4570PFAM: ABC-2 type transporter; KEGG: pcr:Pcryo_1038 hypothetical protein. (417 aa)    
Predicted Functional Partners:
Daci_4571
PFAM: secretion protein HlyD family protein; KEGG: eca:ECA0424 putative membrane protein.
 
  
 0.958
Daci_4572
PFAM: outer membrane efflux protein; KEGG: prw:PsycPRwf_0654 outer membrane efflux protein.
 
   
 0.951
Daci_4569
KEGG: prw:PsycPRwf_0651 ABC-2 type transporter.
 
    
0.841
Daci_0128
PFAM: secretion protein HlyD family protein; KEGG: aav:Aave_4325 secretion protein HlyD family protein.
 
  
 0.653
Daci_4368
PFAM: protein of unknown function DUF181; KEGG: aav:Aave_3061 protein of unknown function DUF181.
  
  
 0.523
Daci_0759
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: ajs:Ajs_2361 ABC transporter related.
 
  
 0.496
Daci_0126
PFAM: protein of unknown function DUF214; KEGG: aav:Aave_4323 protein of unknown function DUF214.
 
  
 0.480
Daci_4461
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccr:CC_1518 ABC transporter, ATP-binding protein.
  
  
 0.455
Daci_5530
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_1019 ABC transporter-related protein.
  
  
 0.455
argA
TIGRFAM: amino-acid N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; aspartate/glutamate/uridylate kinase; KEGG: ajs:Ajs_2327 amino-acid N-acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily.
     
 0.454
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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