Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4581PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: vei:Veis_2043 short-chain dehydrogenase/reductase SDR. (254 aa)    
Predicted Functional Partners:
Daci_4582
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: vei:Veis_2044 periplasmic binding protein/LacI transcriptional regulator.
       0.773
Daci_4584
KEGG: pol:Bpro_1460 sugar-phosphate isomerases, RpiB/LacA/LacB family; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase.
 
   
 0.659
Daci_4579
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bch:Bcen2424_4817 alcohol dehydrogenase GroES domain protein.
 
  
 0.623
Daci_4580
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bpm:BURPS1710b_A1792 sugar ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.623
Daci_0195
3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase; PFAM: MaoC domain protein dehydratase; KEGG: ajs:Ajs_0121 MaoC domain protein dehydratase.
 
 0.588
Daci_4583
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_2046 ABC transporter related.
       0.588
Daci_0762
KEGG: aav:Aave_2051 short-chain dehydrogenase/reductase SDR.
 
  
 0.435
Daci_4578
Transcriptional regulator, DeoR family; PFAM: putative sugar-binding domain protein; KEGG: vei:Veis_2041 transcriptional regulator, DeoR family.
     
 0.425
Daci_1762
KEGG: rfr:Rfer_1849 (acyl-carrier protein) S-malonyltransferase.
 
 
 0.415
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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