STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4597PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cvi:CV_2296 probable transmembrane ABC transporter protein. (221 aa)    
Predicted Functional Partners:
Daci_4598
ABC transporter related; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.
 
 0.992
metN-2
ABC transporter related; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.984
metN
ABC transporter related; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.983
Daci_5613
ABC transporter related; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.
 
 0.983
Daci_4596
PFAM: NLPA lipoprotein; KEGG: reh:H16_B2232 ABC-type transporter, periplasmic component: MUT family; Belongs to the nlpA lipoprotein family.
 
 0.960
Daci_2841
TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: ajs:Ajs_3160 lipoprotein, YaeC family.
 
 0.907
Daci_1782
PFAM: NLPA lipoprotein; KEGG: bur:Bcep18194_B0309 NlpA lipoprotein.
 
 0.906
Daci_1783
PFAM: NLPA lipoprotein; KEGG: bam:Bamb_4689 NlpA lipoprotein.
 
 0.906
Daci_3174
TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: ajs:Ajs_2342 lipoprotein, YaeC family; Belongs to the nlpA lipoprotein family.
 
 0.906
Daci_4605
TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: ajs:Ajs_2342 lipoprotein, YaeC family; Belongs to the nlpA lipoprotein family.
 
 0.906
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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