STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4602PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_2318 AMP-dependent synthetase and ligase. (506 aa)    
Predicted Functional Partners:
Daci_4601
PFAM: BioY protein; KEGG: ajs:Ajs_2319 BioY protein.
 
    0.880
Daci_4603
TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: ajs:Ajs_2317 acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.876
Daci_4604
PFAM: nitroreductase; KEGG: ajs:Ajs_2316 nitroreductase.
   
   0.815
Daci_1266
KEGG: ajs:Ajs_0517 PGAP1 family protein.
     
 0.801
Daci_4600
PFAM: cobalt transport protein; KEGG: ajs:Ajs_2320 cobalt transport protein.
 
  
 0.764
Daci_3751
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_2038 AMP-dependent synthetase and ligase.
 
 
 0.751
Daci_0928
PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_4454 AMP-dependent synthetase and ligase.
  
  
 
0.717
Daci_1072
PFAM: AMP-dependent synthetase and ligase; KEGG: vei:Veis_1683 AMP-dependent synthetase and ligase.
  
  
 
0.715
Daci_1405
PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_A2076 long-chain-fatty-acid--CoA ligase.
  
  
 
0.714
Daci_0696
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0104 AMP-dependent synthetase and ligase.
  
  
 
0.712
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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