STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4604PFAM: nitroreductase; KEGG: ajs:Ajs_2316 nitroreductase. (241 aa)    
Predicted Functional Partners:
Daci_4602
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_2318 AMP-dependent synthetase and ligase.
   
   0.808
Daci_4601
PFAM: BioY protein; KEGG: ajs:Ajs_2319 BioY protein.
       0.773
Daci_4603
TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: ajs:Ajs_2317 acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family.
       0.773
Daci_4600
PFAM: cobalt transport protein; KEGG: ajs:Ajs_2320 cobalt transport protein.
     
 0.605
Daci_4599
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_2321 ABC transporter related.
       0.551
Daci_4368
PFAM: protein of unknown function DUF181; KEGG: aav:Aave_3061 protein of unknown function DUF181.
  
  
 0.550
Daci_0759
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: ajs:Ajs_2361 ABC transporter related.
  
  
 0.518
Daci_0040
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: eli:ELI_06420 glyoxalase family protein.
 
    0.467
Daci_2217
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aav:Aave_1994 glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.454
Daci_5558
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ajs:Ajs_0741 glutamate synthase (ferredoxin).
     
 0.429
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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