Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Daci_2788 | Daci_4725 | Daci_2788 | Daci_4725 | Protein of unknown function DUF710; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. | TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: aav:Aave_3286 histone family protein DNA-binding protein; Belongs to the bacterial histone-like protein family. | 0.480 |
| Daci_2788 | ihfA | Daci_2788 | Daci_4610 | Protein of unknown function DUF710; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. | Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.750 |
| Daci_2879 | Daci_4725 | Daci_2879 | Daci_4725 | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: aav:Aave_3286 histone family protein DNA-binding protein; Belongs to the bacterial histone-like protein family. | 0.452 |
| Daci_2879 | acpP | Daci_2879 | Daci_5269 | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.585 |
| Daci_2879 | hfq | Daci_2879 | Daci_5014 | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.515 |
| Daci_2879 | ihfA | Daci_2879 | Daci_4610 | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.711 |
| Daci_4609 | ihfA | Daci_4609 | Daci_4610 | PFAM: regulatory protein MerR; KEGG: ajs:Ajs_2393 putative transcriptional regulator, MerR family. | Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.925 |
| Daci_4609 | pheT | Daci_4609 | Daci_4611 | PFAM: regulatory protein MerR; KEGG: ajs:Ajs_2393 putative transcriptional regulator, MerR family. | KEGG: ajs:Ajs_2395 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.469 |
| Daci_4725 | Daci_2788 | Daci_4725 | Daci_2788 | TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: aav:Aave_3286 histone family protein DNA-binding protein; Belongs to the bacterial histone-like protein family. | Protein of unknown function DUF710; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. | 0.480 |
| Daci_4725 | Daci_2879 | Daci_4725 | Daci_2879 | TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: aav:Aave_3286 histone family protein DNA-binding protein; Belongs to the bacterial histone-like protein family. | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.452 |
| Daci_4725 | acpP | Daci_4725 | Daci_5269 | TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: aav:Aave_3286 histone family protein DNA-binding protein; Belongs to the bacterial histone-like protein family. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.665 |
| Daci_4725 | cas1 | Daci_4725 | Daci_1209 | TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: aav:Aave_3286 histone family protein DNA-binding protein; Belongs to the bacterial histone-like protein family. | CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. | 0.499 |
| Daci_4725 | hfq | Daci_4725 | Daci_5014 | TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: aav:Aave_3286 histone family protein DNA-binding protein; Belongs to the bacterial histone-like protein family. | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.450 |
| Daci_4725 | ihfA | Daci_4725 | Daci_4610 | TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: aav:Aave_3286 histone family protein DNA-binding protein; Belongs to the bacterial histone-like protein family. | Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.988 |
| acpP | Daci_2879 | Daci_5269 | Daci_2879 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.585 |
| acpP | Daci_4725 | Daci_5269 | Daci_4725 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: aav:Aave_3286 histone family protein DNA-binding protein; Belongs to the bacterial histone-like protein family. | 0.665 |
| acpP | hfq | Daci_5269 | Daci_5014 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.650 |
| acpP | ihfA | Daci_5269 | Daci_4610 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.867 |
| acpP | rplT | Daci_5269 | Daci_4613 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.804 |
| cas1 | Daci_4725 | Daci_1209 | Daci_4725 | CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. | TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: aav:Aave_3286 histone family protein DNA-binding protein; Belongs to the bacterial histone-like protein family. | 0.499 |
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