STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4617TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: vei:Veis_3088 isocitrate lyase. (471 aa)    
Predicted Functional Partners:
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
 
 
 0.995
Daci_0306
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ajs:Ajs_0168 protein of unknown function DUF224, cysteine-rich region domain protein.
     
 0.919
Daci_2433
TIGRFAM: aconitate hydratase 2; PFAM: aconitate hydratase domain protein; Aconitase B, N-terminal; KEGG: aav:Aave_2210 aconitate hydratase; Belongs to the aconitase/IPM isomerase family.
    
 0.919
Daci_2441
TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: ajs:Ajs_1145 aconitate hydratase 1.
   
 
 0.916
Daci_4555
PFAM: aconitate hydratase domain protein; KEGG: pol:Bpro_3871 aconitate hydratase-like.
   
 
 0.916
Daci_1083
PFAM: FAD linked oxidase domain protein; KEGG: aav:Aave_0645 FAD linked oxidase domain protein.
     
 0.913
Daci_2117
TIGRFAM: glyoxylate carboligase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: psa:PST_3114 glyoxylate carboligase; Belongs to the TPP enzyme family.
     
 0.913
Daci_1407
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: reh:H16_B0841 D-3-phosphoglycerate dehydrogenase.
   
 
 0.912
Daci_5635
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rsh:Rsph17029_3087 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
   
 
 0.912
Daci_5969
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ajs:Ajs_3758 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
   
 
 0.912
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.