STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4618PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_2402 protein of unknown function DUF6, transmembrane. (316 aa)    
Predicted Functional Partners:
Daci_0881
PFAM: Sporulation domain protein; KEGG: aav:Aave_4630 sporulation domain protein.
  
     0.636
Daci_0836
KEGG: ajs:Ajs_4003 hypothetical protein.
 
     0.539
Daci_5389
PFAM: protein of unknown function DUF6 transmembrane; KEGG: aav:Aave_3469 protein of unknown function DUF6, transmembrane.
 
     0.529
Daci_4619
PFAM: SWIB/MDM2 domain protein; KEGG: aav:Aave_2865 SWIB/MDM2 domain protein.
 
     0.517
Daci_3007
KEGG: ajs:Ajs_2549 hypothetical protein.
  
     0.516
Daci_1447
PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4902 hypothetical protein.
 
     0.507
Daci_4929
KEGG: ajs:Ajs_2388 hypothetical protein.
  
     0.466
Daci_4617
TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: vei:Veis_3088 isocitrate lyase.
       0.451
Daci_1458
KEGG: vei:Veis_4558 hypothetical protein.
  
     0.439
Daci_2904
KEGG: aav:Aave_1802 hypothetical protein.
 
     0.418
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.