STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4619PFAM: SWIB/MDM2 domain protein; KEGG: aav:Aave_2865 SWIB/MDM2 domain protein. (99 aa)    
Predicted Functional Partners:
Daci_4620
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: vei:Veis_3083 FMN-dependent alpha-hydroxy acid dehydrogenase.
       0.618
Daci_4343
KEGG: aav:Aave_1492 putative DNA topoisomerase, type I.
    
 
 0.532
Daci_4618
PFAM: protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_2402 protein of unknown function DUF6, transmembrane.
 
     0.517
Daci_4621
KEGG: aav:Aave_3310 BFD domain protein (2Fe-2S)-binding domain protein.
       0.514
Daci_0883
PFAM: nuclear protein SET; KEGG: ajs:Ajs_3991 nuclear protein SET.
 
 
 
 0.449
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.