Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Daci_4626PFAM: protein of unknown function DUF336; KEGG: ajs:Ajs_2410 protein of unknown function DUF336. (141 aa)    
Predicted Functional Partners:
Daci_0306
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ajs:Ajs_0168 protein of unknown function DUF224, cysteine-rich region domain protein.
 
  
 0.803
Daci_4627
PFAM: protein of unknown function UPF0005; KEGG: aav:Aave_3316 protein of unknown function UPF0005; Belongs to the BI1 family.
 
     0.605
Daci_0304
PFAM: FAD linked oxidase domain protein; KEGG: vei:Veis_3312 FAD linked oxidase domain protein.
 
  
 0.528
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
  
 0.450
Daci_1083
PFAM: FAD linked oxidase domain protein; KEGG: aav:Aave_0645 FAD linked oxidase domain protein.
 
  
 0.427
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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