STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4627PFAM: protein of unknown function UPF0005; KEGG: aav:Aave_3316 protein of unknown function UPF0005; Belongs to the BI1 family. (230 aa)    
Predicted Functional Partners:
Daci_4626
PFAM: protein of unknown function DUF336; KEGG: ajs:Ajs_2410 protein of unknown function DUF336.
 
     0.620
Daci_4628
KEGG: aav:Aave_3317 hypothetical protein.
       0.613
htpX
PFAM: peptidase M48 Ste24p; HtpX domain protein; KEGG: aav:Aave_4316 peptidase M48, Ste24p; Belongs to the peptidase M48B family.
  
  
 0.511
Daci_5460
PFAM: import inner membrane translocase subunit Tim44; KEGG: ajs:Ajs_0868 import inner membrane translocase, subunit Tim44.
  
  
 0.503
Daci_5337
PFAM: peptidase M48 Ste24p; KEGG: aav:Aave_1892 STE24 endopeptidase.
 
  
 0.483
Daci_4770
PFAM: Colicin V production protein; KEGG: aav:Aave_1862 colicin V production protein.
  
    0.458
Daci_5532
PFAM: toluene tolerance family protein; KEGG: ajs:Ajs_0752 toluene tolerance family protein.
  
     0.449
Daci_4896
PFAM: Methyltransferase type 11; KEGG: vei:Veis_0592 methyltransferase type 11.
 
     0.432
Daci_3664
KEGG: rfr:Rfer_1207 aspartyl protease-like.
  
     0.402
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins.
   
  
 0.402
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.