Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4627PFAM: protein of unknown function UPF0005; KEGG: aav:Aave_3316 protein of unknown function UPF0005; Belongs to the BI1 family. (230 aa)    
Predicted Functional Partners:
Daci_4626
PFAM: protein of unknown function DUF336; KEGG: ajs:Ajs_2410 protein of unknown function DUF336.
 
     0.605
Daci_4628
KEGG: aav:Aave_3317 hypothetical protein.
       0.604
Daci_5460
PFAM: import inner membrane translocase subunit Tim44; KEGG: ajs:Ajs_0868 import inner membrane translocase, subunit Tim44.
  
  
 0.547
htpX
PFAM: peptidase M48 Ste24p; HtpX domain protein; KEGG: aav:Aave_4316 peptidase M48, Ste24p; Belongs to the peptidase M48B family.
  
  
 0.532
Daci_5012
HflK protein; HflC and HflK could encode or regulate a protease.
 
  
 0.509
Daci_5337
PFAM: peptidase M48 Ste24p; KEGG: aav:Aave_1892 STE24 endopeptidase.
 
  
 0.463
Daci_4896
PFAM: Methyltransferase type 11; KEGG: vei:Veis_0592 methyltransferase type 11.
 
    0.453
Daci_5532
PFAM: toluene tolerance family protein; KEGG: ajs:Ajs_0752 toluene tolerance family protein.
  
     0.449
yidC
60 kDa inner membrane insertion protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
 
     0.415
mscL
Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
  
  
 0.414
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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