STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4633KEGG: pna:Pnap_1480 NAD-dependent epimerase/dehydratase. (134 aa)    
Predicted Functional Partners:
Daci_4634
KEGG: pna:Pnap_1479 integral membrane protein-like protein.
 
     0.938
Daci_4632
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: aav:Aave_1940 NAD-dependent epimerase/dehydratase.
       0.779
Daci_4631
KEGG: aav:Aave_1942 transcriptional regulator-like protein; Belongs to the GbsR family.
 
     0.727
Daci_5313
KEGG: hch:HCH_02671 hypothetical protein.
  
    0.688
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
 0.651
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 0.648
Daci_0719
PFAM: sodium/hydrogen exchanger; KEGG: aav:Aave_0435 sodium/hydrogen exchanger.
  
     0.648
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.647
Daci_2014
KEGG: vei:Veis_4644 porin, gram-negative type.
  
     0.642
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
 0.628
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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