STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4634KEGG: pna:Pnap_1479 integral membrane protein-like protein. (159 aa)    
Predicted Functional Partners:
Daci_4633
KEGG: pna:Pnap_1480 NAD-dependent epimerase/dehydratase.
 
     0.938
Daci_4632
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: aav:Aave_1940 NAD-dependent epimerase/dehydratase.
 
     0.896
Daci_4631
KEGG: aav:Aave_1942 transcriptional regulator-like protein; Belongs to the GbsR family.
 
     0.789
Daci_0675
PFAM: sigma-54 factor interaction domain-containing protein; regulator of RNA terminal phosphate cyclase; SMART: AAA ATPase; KEGG: pna:Pnap_0497 regulator of RNA terminal phosphate cyclase.
  
     0.455
Daci_4630
KEGG: aav:Aave_3319 hypothetical protein.
       0.439
Daci_0679
KEGG: bam:Bamb_5431 nucleotidyltransferase-like protein.
  
     0.430
Daci_4364
SMART: low molecular weight phosphotyrosine protein phosphatase; KEGG: pna:Pnap_2721 low molecular weight phosphotyrosine protein phosphatase.
  
     0.405
Daci_5608
TIGRFAM: cytidyltransferase-related domain protein; PFAM: NUDIX hydrolase; cytidylyltransferase; KEGG: ajs:Ajs_0701 cytidyltransferase-related domain.
  
     0.400
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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