STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4635PFAM: TOBE domain protein; KEGG: aav:Aave_3040 TOBE domain protein. (71 aa)    
Predicted Functional Partners:
Daci_4637
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3042 binding-protein-dependent transport systems inner membrane component.
 
  
 0.764
ssuB-2
ABC transporter related; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
  
 0.733
ssuD-2
Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
 
    0.680
Daci_4639
KEGG: pna:Pnap_2419 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3.
 
  
 0.612
Daci_4640
KEGG: rfr:Rfer_1779 ABC transporter, substrate-binding protein, aliphatic sulphonates; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3.
 
  
 0.595
Daci_2729
PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_3028 transcriptional regulator, XRE family.
  
     0.485
Daci_1519
Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
  
  
 0.470
Daci_3882
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0154 molybdenum ABC-transporter, permease protein (ModB)-like.
  
  
 0.470
Daci_0375
KEGG: pol:Bpro_1655 hypothetical protein.
  
     0.453
cysA
Sulfate ABC transporter, ATPase subunit; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
  
  
 0.452
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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