Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4649PFAM: transport system permease protein; ABC-3 protein; KEGG: pde:Pden_0865 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (337 aa)    
Predicted Functional Partners:
Daci_4650
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A3223 ABC transporter component.
 
 
 0.976
Daci_4648
PFAM: periplasmic binding protein; KEGG: rpc:RPC_1985 periplasmic binding protein.
 
 
 0.971
Daci_3790
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO0998 Fe uptake system permease.
 
 
 0.900
Daci_2794
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_2362 ABC transporter related.
 
 
 0.883
Daci_3149
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_3622 ferric enterobactin transport protein FepC PA4158.
 
 
 0.883
Daci_3729
PFAM: periplasmic binding protein; KEGG: ajs:Ajs_1099 periplasmic binding protein.
 
 
 0.868
Daci_2792
PFAM: periplasmic binding protein; KEGG: pol:Bpro_2782 periplasmic binding protein.
 
 
 0.867
Daci_5751
PFAM: periplasmic binding protein; KEGG: rxy:Rxyl_2468 periplasmic binding protein.
 
 
 0.867
Daci_4645
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azo:azo3836 probable TonB-dependent receptor.
 
  
 0.805
Daci_4647
KEGG: rru:Rru_A0135 molybdenum ABC transporter ATP-binding protein.
       0.781
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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