Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4650PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A3223 ABC transporter component. (261 aa)    
Predicted Functional Partners:
Daci_4649
PFAM: transport system permease protein; ABC-3 protein; KEGG: pde:Pden_0865 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.976
Daci_4648
PFAM: periplasmic binding protein; KEGG: rpc:RPC_1985 periplasmic binding protein.
 
 
 0.975
Daci_5750
PFAM: transport system permease protein; KEGG: mes:Meso_1443 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.866
Daci_3791
PFAM: transport system permease protein; KEGG: ava:Ava_B0152 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.864
Daci_2793
PFAM: transport system permease protein; KEGG: pol:Bpro_2781 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.860
Daci_4645
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azo:azo3836 probable TonB-dependent receptor.
 
  
 0.851
Daci_3151
PFAM: transport system permease protein; KEGG: pfl:PFL_3624 ferric vibriobactin ABC transporter, permease protein VC0777; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.835
Daci_4647
KEGG: rru:Rru_A0135 molybdenum ABC transporter ATP-binding protein.
 
     0.823
Daci_3152
PFAM: transport system permease protein; KEGG: pfl:PFL_3625 ferric vibriobactin ABC transporter, permease protein VC0778; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.769
Daci_3729
PFAM: periplasmic binding protein; KEGG: ajs:Ajs_1099 periplasmic binding protein.
 
 
 0.751
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.