Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4683PFAM: peptidase U35 phage prohead HK97; KEGG: oan:Oant_1504 peptidase U35 phage prohead HK97. (693 aa)    
Predicted Functional Partners:
Daci_4684
TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: nwi:Nwi_0808 phage portal protein, lambda.
 
    0.918
Daci_4687
PFAM: terminase GpA; KEGG: ssn:SSON_2430 putative DNA packaging protein of prophage.
 
  
 0.906
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
  
 0.872
Daci_4682
KEGG: pna:Pnap_2252 putative RecA/RadA recombinase.
 
    0.866
Daci_3432
TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: eba:ebA7269 phage portal protein, lambda family.
 
    0.751
Daci_4676
Hypothetical protein; KEGG: aav:Aave_1782 prophage tail length tape measure.
 
    0.663
Daci_3255
PFAM: Prophage tail length tape measure; KEGG: aav:Aave_1782 prophage tail length tape measure.
 
    0.649
Daci_4670
PFAM: glycoside hydrolase family 24; KEGG: aav:Aave_1729 putative endolysin (lysis protein) (lysozyme).
 
     0.648
Daci_1393
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ajs:Ajs_3739 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
  0.628
Daci_4685
Hypothetical protein.
       0.610
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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