STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4687PFAM: terminase GpA; KEGG: ssn:SSON_2430 putative DNA packaging protein of prophage. (698 aa)    
Predicted Functional Partners:
Daci_4684
TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: nwi:Nwi_0808 phage portal protein, lambda.
 
  
 0.943
Daci_4683
PFAM: peptidase U35 phage prohead HK97; KEGG: oan:Oant_1504 peptidase U35 phage prohead HK97.
 
  
 0.905
Daci_4676
Hypothetical protein; KEGG: aav:Aave_1782 prophage tail length tape measure.
 
  
 0.865
Daci_1331
Hypothetical protein; KEGG: aav:Aave_1628 prophage tail length tape measure.
 
  
 0.840
Daci_4688
KEGG: atc:AGR_C_800 hypothetical protein.
  
    0.829
Daci_3432
TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: eba:ebA7269 phage portal protein, lambda family.
 
  
 0.823
Daci_3255
PFAM: Prophage tail length tape measure; KEGG: aav:Aave_1782 prophage tail length tape measure.
 
    0.792
Daci_4686
PFAM: Resolvase helix-turn-helix domain protein.
       0.773
Daci_2821
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: pau:PA14_10980 hypothetical protein.
  
     0.718
Daci_3439
KEGG: tcx:Tcr_0682 hypothetical protein.
 
     0.703
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.