Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4690Hypothetical protein. (113 aa)    
Predicted Functional Partners:
Daci_4689
PFAM: protein of unknown function DUF1376; KEGG: xft:PD1347 hypothetical protein.
       0.701
Daci_4691
KEGG: pna:Pnap_2259 hypothetical protein.
       0.682
Daci_4692
KEGG: pna:Pnap_2262 hypothetical protein.
       0.682
Daci_4693
Hypothetical protein.
       0.508
Daci_4686
PFAM: Resolvase helix-turn-helix domain protein.
       0.441
Daci_4687
PFAM: terminase GpA; KEGG: ssn:SSON_2430 putative DNA packaging protein of prophage.
       0.441
Daci_4688
KEGG: atc:AGR_C_800 hypothetical protein.
       0.441
Daci_4684
TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: nwi:Nwi_0808 phage portal protein, lambda.
       0.401
Daci_4685
Hypothetical protein.
       0.401
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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